PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G138700.1
Common NameB456_006G138700, LOC105799514
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 365aa    MW: 40865.5 Da    PI: 6.4451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G138700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05285307123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk+F  + + ++H +++
  Gorai.006G138700.1 285 FMCRKCGKTFAVRGDWRTHEKNC 307
                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.4E-5197224No hitNo description
Gene3DG3DSA:3.30.160.607.5E-6201220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.58201223IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076201228IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-6267305No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5281305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035535285305IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725285305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MADHPYSSFF SGWYKFNPLQ NHPSPNPPPQ HNPNFFTQNL YNTTTIFMRN DPTNTSSIFH  60
YQTSCSSSPP SPPVRKELPL LSLTPTPTRC EKEEEEHDDG VEDQDQDLYI CNGMSKGKEG  120
GGLVLSSGAA EDEDEDETAT VALHIGLPSP TASELASVLS SSSSFSEMRD KDGDEYPVNT  180
LSKGQYWIPT PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSEYRKG PESLKGSQPT  240
GMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKTFAVRGDW  300
RTHEKNCGKL WYCTCGSDFK HKRSLKDHIK AFGNGHAAYD ITISGLEEDD DPASEVEQDN  360
DSMQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485567.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-129ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D2NSJ10.0A0A0D2NSJ1_G
STRINGVIT_08s0007g08070.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]